rs28154253 SNP Detail

Summary

• ID
  rs28154253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106640934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGAAATT AATTACGTCC
  ATTGGGAAGG TATCAGTGGT GAAACAGAAG CAAAGAAAGT CTCTGTCCCA GATCTTAAAT
  GAGTGAGCAA AGCCAGGAGT TTTGGGGCAA ATCATTACAG GGTTATTTCC TCTGAACTGA
  ACTTCTCAAA GACGCCACAT CTATACGGAA GGTCCTGAAT GTGGCTGGAC TGTCGGCTGA
  Y
  TTGAACACTG TGACTGTGGA GAGATGGAAC AAACCTGTAT TTGTCTCTTA GGTATTGAGA
  CAAAGTCTCT CTTTGTAGCT CAGGCTGGCC TCACACTCAT GACCCTCCTC CTGTCTCAGT
  GCTGGGATTA CAGTATGTCC AGAGCCTTTC CCAAAGCCAT TCACAATCAT TTCCATATGT
  GACCCAACAT CCTCATGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38287976	NES09620395	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28154253					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38287976	NES09620395	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106640934 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	1606 bp proximal