rs28154247 SNP Detail

Summary

• ID
  rs28154247
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106641758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATTCTTT TGTTCAACCG
  CCACCTGGCA ACCCAATAAT CCAGTTTCCT TGTTTGTAAA GTGAGACTCT AAAGACTTAG
  CATGGCTGAC CTGAGGTGTA AATGAGAGGA CGTAGCCAAA GGACTTTGCC AATCACAGTG
  GCTCTGACCT CCGTCTGAGC AAGGGCAGTC CACCAGACTG GGTCAGCCTA CCAAGTAAGT
  K
  CGTCTAAGCC GGCTGCCATC CCAGAGTCAG GGTCCAGACG AAAGACAGAC AAGGCAAGAA
  GTAATATGGG AAATGCTGTC ACACCCAGGG GCACAGGGGT CATGTGACCA GGATGCAGCT
  TTCCCCTGAC AGCATGCCCG CTCTGACTTC TCTGTATTGC TTGGACATTA TACCCACCAT
  GTACCTGAAC TTAACAACCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38287970	NES09620361	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G	G		G	G	G		G
ss321247195	CHEV_4_106457166	CHEVERUD	SCREENING_POP	f	SNP									G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28154247					SNP	G	G	G	T	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38287970	NES09620361	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106641758 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	782 bp proximal