rs28154238 SNP Detail

Summary

• ID
  rs28154238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106643978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTCCTCTC TGCAGGTAGA AGATGCTGAT CAGGATCAGG
  CAACCCATGG CAGAGGCTGG ACCGGGCACT GCAGCCCAGG CAGCCCTGCA GGGGCTCACT
  Y
  CTTATACCCC AGGTTCTTCT CCGAGCCTTC AGCTCAGGGG AGTTGATGGA CTATAAAATA
  GCCCTGACCT GACCTGGCCT CACAGCACCA ACATACTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss38287961	NES09620352	PERLEGEN	MM_PANEL2	f	SNP	T		T	C		T	C	T
ss45661535	mCV24674726	ABI	CRAMUS_MOUSE	f	SNP		T	T		C
ss147171803	ENSMUSSNP3382516	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs28154238					SNP	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38287961	NES09620352	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106643978 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	within coordinates
Rr596809	regulatory region 596809	761 bp proximal
Rr596810	regulatory region 596810	772 bp proximal