rs28154236 SNP Detail

Summary

• ID
  rs28154236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106644171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATACTCCCTC CACTGTGTGA AAGGGACCTG AGCCAAGAGA
  AAAGCTTGCT GAAAAAGCCA AGAAAGGTAG AAAGAGAAGA AAGACAAAGT TTGCGGTGAT
  Y
  GGCAAGAGAT CTGTGACCAA GCCCCACAGG TTCTTGGTAC TCTGGATGTG GCCCTGCCTC
  TGGTTTGCTG GAGAACCGAG CATAACTTAA GCTACTCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38287959	NES09620354	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	C		C	T	C		C	C		T
ss45726944	mCV24674725	ABI	CRAMUS_MOUSE	f	SNP		T	T				T	C
ss147171812	ENSMUSSNP4948028	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss321247226	CHEV_4_106459579	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28154236					SNP	T	T	T	C	C	C	T	C	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38287959	NES09620354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106644171 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	149 bp distal
Rr596809	regulatory region 596809	568 bp proximal
Rr596810	regulatory region 596810	579 bp proximal