rs28154233 SNP Detail

Summary

• ID
  rs28154233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106644907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTCAAGGC CAAACATCAT CAGGGCCCAG TGAGAACCTG
  GAGATTGAGC CTGGAGGGGT TTCCCGTGGT GCCCCTGGAG ACTGAACCTG GACCAGTTCC
  R
  TAGAGCCCCA TGCTGCACCA AATGGCAGGA ATGAGGACGG GCCTGGTCAT CAGCAGGCTG
  ACAAAAAAGC CAAGCAGGGG ACCCTGCATC CAGCGCTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38287956	NES09620344	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	G	A	G	A		G	A		G
ss147171827	ENSMUSSNP6682687	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				A
ss321247234	CHEV_4_106460315	CHEVERUD	SCREENING_POP	f	SNP										G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28154233					SNP	G	G	G	G	A	G	A	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38287956	NES09620344	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106644907 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	885 bp distal
Rr596809	regulatory region 596809	within coordinates
Rr596810	regulatory region 596810	136 bp distal
Rr596811	regulatory region 596811	1993 bp proximal