rs28154220 SNP Detail

Summary

• ID
  rs28154220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106647372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGAGCC CCAGACGGCT
  CCCGGAGGCA GCATGAAGGC AGATGGGAAA GGAGCCAACT GAGAGGAGGA GAAGGAGTCC
  AGTCAGAATG ATTTAGAAAA AAGATGAGAG CCAGCCAAGT GGAAACTGGT ACCACACAAG
  AAGTCACTGG TAGGTGAACT GGGATGGGAA TGGCTTTGCT TTCATGGAGA CTGGGAAGTA
  Y
  TGGTGTTAGT TCATCTGCTG AGGAGTATGG CAGGTGGAGG GTCCCCCAGA GCCAGAGAGC
  TGCCCACGTG ATGGATACCT AGCATCTAAA AAGTACTCGG GCACAAGCTC AGAGATCCTC
  TTAAGAAATC TGCTGTCATG GGCTGGAGAT GTAGCTCGGC AGGTAAGAGC ACTGACTGCT
  CTTTCGAAGG TCCTGAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38287943	NES09620300	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28154220					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38287943	NES09620300	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106647372 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596809	regulatory region 596809	1911 bp distal
Rr596811	regulatory region 596811	76 bp distal
Rr596812	regulatory region 596812	239 bp proximal
Rr596813	regulatory region 596813	702 bp proximal
Rr596814	regulatory region 596814	1933 bp proximal