rs28154210 SNP Detail

Summary

• ID
  rs28154210
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106649598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACATACA CAGGTACACA
  CATATATACA CACATACACA GACAGACACA CACACACATA CACATGCGTG CACACAAACA
  CTCTCTCTCT CACACACACA CACTCCTCAC AGGGTATGTT TTAGGGAAGA ACAAGATGCT
  AGTCTGGTCT CTTCAGGCCT CATAAGGGAT CTGAAGGAAG TGAGGAGCCA CCTGACTTTG
  K
  GAAACCAAGG CTGCCTTATG GAGGCCCATG GGGAGCTCCC CCTTCAGGCC TCTGACCCAA
  GCTAGACCAC ACCCTAGGGT GGATCACAGC CTGTTCTCAT GTCACAGATA GGACAAGGCC
  AAGGAGTGGA GAGACAGATG TGAGAATGGA CCCATAGGTC CCCAGTGAGC AGGTGGAACA
  AAGGTCTCCT CTGGGCCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38287933	NES09620253	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	G	G	G	G	G		G	G	G	G		G
ss321247255	CHEV_4_106465006	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28154210					SNP	G	G	T	G	T	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38287933	NES09620253	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106649598 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596812	regulatory region 596812	1966 bp distal
Rr596813	regulatory region 596813	887 bp distal
Rr596814	regulatory region 596814	within coordinates
Rr596815	regulatory region 596815	32 bp proximal
Rr596816	regulatory region 596816	1611 bp proximal
Rr596817	regulatory region 596817	1800 bp proximal