rs28154209 SNP Detail

Summary

• ID
  rs28154209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106649858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTAGACCA CACCCTAGGG
  TGGATCACAG CCTGTTCTCA TGTCACAGAT AGGACAAGGC CAAGGAGTGG AGAGACAGAT
  GTGAGAATGG ACCCATAGGT CCCCAGTGAG CAGGTGGAAC AAAGGTCTCC TCTGGGCCCC
  CAGTCTGGGG CTGGTTTCCT AGGTCTCTGA AGAGCCAAGG TGAGGTTCAT ACAGAACTTT
  Y
  TAACTGTGAA GGAAATGTCC ACATGAAGAG GCAAGAAGTA CCCTAAGAAA GCCAACAGTA
  ATGCCCTCCT ATAAGCAAGT TCTTGGGAGT TGGAGGCACA ATGATCAGGA GTTCAAGGAC
  AGTCTCGGCC ACATAGTTCA AGGCCAAGAG GTCTCAAATA CGGAGCAAGG ATAAGAGTGG
  AGGGCGGGTG AGAGCAGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38287932	NES09620254	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28154209					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38287932	NES09620254	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106649858 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596813	regulatory region 596813	1147 bp distal
Rr596814	regulatory region 596814	within coordinates
Rr596815	regulatory region 596815	207 bp distal
Rr596816	regulatory region 596816	1351 bp proximal
Rr596817	regulatory region 596817	1540 bp proximal