rs28154204 SNP Detail

Summary

• ID
  rs28154204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106650198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCTACTGG AGTTCAGTAC GCAATCATAA ATCCTGACAG
  GGACAGGTTT CCCTCCAGCA CTGGACTAAA GCTAAAGCTG GGTTGTCTAC AGAACATCCC
  R
  AAGGCACGAA TGTAAAGCTG AGGCCCTACT TTTCTCCCTC CCAGCGACAG CCCTGCCCAC
  TGAGGGCTGC CTCGAGTAGC ATTAATTGAT GAATTTATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38287927	NES09620249	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	A	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28154204					SNP	G	G	G	G	G	G	A	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38287927	NES09620249	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106650198 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596813	regulatory region 596813	1487 bp distal
Rr596814	regulatory region 596814	within coordinates
Rr596815	regulatory region 596815	547 bp distal
Rr596816	regulatory region 596816	1011 bp proximal
Rr596817	regulatory region 596817	1200 bp proximal