rs28154201 SNP Detail

Summary

• ID
  rs28154201
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106650693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCATCAGCC TAGGGGCCCT AGAGGACAGG TCTGGCCTGG
  CTCATGCCAA TGTTCCCAAA GTACTCTGGT CCTTTTCATC ATTGTATGAC TCTAATGTCA
  Y
  CGTCTACCTG CAGAGAAGCT ACTCCTGGAA TGGCAGGGAT ACACACACAG GCCTGTGGCC
  AGGGGAGTGG CAGAGGACCC AGCTAGCTGT GCCATCTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38287924	NES09620235	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C	C	T	C	T
ss45601194	mCV23881958	ABI	CRAMUS_MOUSE	f	SNP	C	C						T
ss147171943	ENSMUSSNP6702942	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28154201					SNP	C	C	C	C	C	C	C	T	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38287924	NES09620235	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106650693 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596813	regulatory region 596813	1982 bp distal
Rr596814	regulatory region 596814	479 bp distal
Rr596815	regulatory region 596815	1042 bp distal
Rr596816	regulatory region 596816	516 bp proximal
Rr596817	regulatory region 596817	705 bp proximal