rs28154062 SNP Detail

Summary

• ID
  rs28154062
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106715615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCCCGGT ACCTAGAGAG
  TGATCTGGAA CAAGAGCTTA ATAAGCTCAG AGGACATGTT CCCTTGTGCC CCGTCCCCCT
  CCCATTGGAA AATGGTTTAG GAGACCCCTA CATTATAATG TTCAGAGTGA AGAGTAAATC
  CAAGTGCCTG GGGCAGACTC CCTGCCTCTG TTCCCATCAG AGCTCTTGCT TTTCCAAGAA
  W
  CATACCAGAG TCTGAAGCCT TTGTCCCTCT GATCCATGAC CAGCAAAGGA CATCTCGGAT
  CTTGCCTGCA GGCGTAGCCG GAGTCGGCAG GCGCAGGGAG AGAGGAATTC TAAAGCCTCC
  TCCCACTCAG CCACCTCGTG GACTATCACA CTGCCACGTG TGCCAGCCCT CAGCTGCCCC
  GAGAGCTGTC ACTGTGGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
ss38287783	NES09618542	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	T	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
rs28154062					SNP	A	A	A	T	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38287783	NES09618542	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106715615 () rs orientation: forward

Symbol	Name	Function Class
Gm12746	predicted gene 12746	within coordinates
Gm69780	predicted gene, 69780	853 bp downstream
Gm70282	predicted gene, 70282	1423 bp upstream
Rr376973	regulatory region 376973	580 bp upstream
Rr596849	regulatory region 596849	1184 bp proximal
Rr596850	regulatory region 596850	1434 bp proximal
Tssr38192	transcription start site region 38192	1303 bp upstream
Tssr42651	transcription start site region 42651	959 bp downstream
Tssr42652	transcription start site region 42652	1169 bp downstream
Tssr42653	transcription start site region 42653	1180 bp downstream