rs28154059 SNP Detail

Summary

• ID
  rs28154059
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106715853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAGCAAA GGACATCTCG
  GATCTTGCCT GCAGGCGTAG CCGGAGTCGG CAGGCGCAGG GAGAGAGGAA TTCTAAAGCC
  TCCTCCCACT CAGCCACCTC GTGGACTATC ACACTGCCAC GTGTGCCAGC CCTCAGCTGC
  CCCGAGAGCT GTCACTGTGG AAACAAGGAG AGTGTAGTAG ATTGCTGTCT GTACTCCCCG
  M
  ATTCAAGAAG GCAAGGCAGA GCTGGGTGTG GTGGCGCACT CCTTTAATCC CAGCACTTGG
  GAGGCAGAGG CAGGCGGATT TCTGAGTTCG AGGCCAGCCT GGTCTACAGA GTGAGTTCCA
  GGACAGCCAG GGCTATACAG AGAAACCCTG TCTCAAAAAA CCAAAAAAAA AAAAAAAGAA
  GAAGAAGAAG GTGAGGCAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38287780	NES09618548	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	A	C	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28154059					SNP	C	C	C	A	C	A	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38287780	NES09618548	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106715853 () rs orientation: forward

Symbol	Name	Function Class
Gm12746	predicted gene 12746	138 bp upstream
Gm69780	predicted gene, 69780	615 bp downstream
Gm70282	predicted gene, 70282	1185 bp upstream
Rr376973	regulatory region 376973	342 bp upstream
Rr596849	regulatory region 596849	946 bp proximal
Rr596850	regulatory region 596850	1196 bp proximal
Tssr38192	transcription start site region 38192	1065 bp upstream
Tssr42651	transcription start site region 42651	721 bp downstream
Tssr42652	transcription start site region 42652	931 bp downstream
Tssr42653	transcription start site region 42653	942 bp downstream