rs28154058 SNP Detail

Summary

• ID
  rs28154058
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106716423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGAGCAA CAGGCACACA
  TGCAGTGTAC ATACATGTGC AGACAAACAC CCAAACACAT TAAATTAAAA ACAAAACAAA
  AAAACAGAAC TCACATGATG GCTCCTTGGG TATGATCTCT TGCTGCCAGG CCTGACAACC
  TGGTTGTGAT CCCCAGGGAG AGGAAGAACC GGTTTCCAGC AAGTGAATTC TTCAGGAGCA
  M
  ACAGCAGCAT TTCCCCACTC CCAACAATAA ACAGTGAGAA ATAGTTGTTG TTGTTGTTGT
  TGTTTTTATT TAAAAGGAAA AAAAGAAGGA GGAAACAGGC TCATGGAAGG CTAAGGAGGC
  GTAGGCTTCC TAACAGTACA GCAACTCAGC TCCTTTGTAG CCTCAGAACT CTCCTGAGCC
  ACTGGTGAGG GCCTGGAACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38287779	NES09618524	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28154058					SNP	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38287779	NES09618524	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106716423 () rs orientation: forward

Symbol	Name	Function Class
Gm12746	predicted gene 12746	708 bp upstream
Gm69780	predicted gene, 69780	45 bp downstream
Gm70282	predicted gene, 70282	615 bp upstream
Rr376973	regulatory region 376973	within coordinates
Rr596849	regulatory region 596849	376 bp proximal
Rr596850	regulatory region 596850	626 bp proximal
Tssr38192	transcription start site region 38192	495 bp upstream
Tssr42651	transcription start site region 42651	151 bp downstream
Tssr42652	transcription start site region 42652	361 bp downstream
Tssr42653	transcription start site region 42653	372 bp downstream