rs28154054 SNP Detail

Summary

• ID
  rs28154054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106717243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCA GCCACTGTCA CTTAGAATTA
  Y
  GGTCACCGCA TTCTCTGCTC ACCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38287775	NES09618530	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T	C		T	T		C	T		C
ss45692162	mCV23880907	ABI	CRAMUS_MOUSE	f	SNP		T	T					C	T
ss147172901	ENSMUSSNP2686488	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss321247426	CHEV_4_106532651	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28154054					SNP	T	T	T	T	C	T	C	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38287775	NES09618530	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106717243 () rs orientation: forward

Symbol	Name	Function Class
Gm12746	predicted gene 12746	1528 bp upstream
Gm69305	predicted gene, 69305	1437 bp upstream
Gm69780	predicted gene, 69780	434 bp upstream
Gm70282	predicted gene, 70282	within coordinates
Rr376973	regulatory region 376973	within coordinates
Rr596849	regulatory region 596849	195 bp distal
Rr596850	regulatory region 596850	within coordinates
Tssr38192	transcription start site region 38192	291 bp downstream
Tssr42651	transcription start site region 42651	657 bp upstream
Tssr42652	transcription start site region 42652	450 bp upstream
Tssr42653	transcription start site region 42653	426 bp upstream