rs28153691 SNP Detail

Summary

• ID
  rs28153691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105174516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGGATG TCTGTCTGTC
  TCTTTAGATC TGATCTAAAG TTACTAAGAT AGGGGTGTTT AACACAAGTC TCTGATAGTT
  GTTTTCACTG TTGGATATTG AAACTAGGGG CACTGTGTAT GCTTGGAAGT GCTCTACCAC
  TGAGCCACAC CCCCAGCTCC TCTACAGATT TTTCAGATCT ACATTCTACA CGAATAGGGT
  Y
  GCATTCAGCC GTCACACGTG TAGACTCTCA CGCCGAAGTG ATTTTGAACA TGTAGGAAGG
  AAAGAGAAAG CATTATTCAG GGTGTGCTCT GGGCCACGCT GCGGTTATGC TTCACCCTGT
  AAGTGCCCCA ACCACCTTGT AAGAAAAGGA ATTTCTCAAT CCAGGCTTGG GCATATGTAG
  TGTCTAAAGG ATCGGTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38294718	NES09512308	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28153691					SNP	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38294718	NES09512308	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105174516 () rs orientation: forward

Symbol	Name	Function Class
Gm40217	predicted gene, 40217	within coordinates
Rr596595	regulatory region 596595	1881 bp distal
Rr596596	regulatory region 596596	135 bp distal
Rr596597	regulatory region 596597	239 bp distal