rs28153689 SNP Detail

Summary

• ID
  rs28153689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105174826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGAATTCA CATCTGGGCA AATATCACAC AGGCTACCCT
  TGGAAAAACA AACTATTCTA TTTGTTATTA TTTACATAAT GTACACTTAG TGTGCACAAA
  Y
  GAGAAGCATT TTTTATTAGA TATTTTCTTT ATTTACATTT CAAATGTTAT CCCCTTCCCT
  AGTTCCCCTC AGAAAATTCT CTATCTCCTC CCCCTCCGCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss38294716	NES09512310	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs28153689					SNP	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38294716	NES09512310	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105174826 () rs orientation: forward

Symbol	Name	Function Class
Gm40217	predicted gene, 40217	within coordinates
Rr596596	regulatory region 596596	445 bp distal
Rr596597	regulatory region 596597	549 bp distal