rs28153358 SNP Detail

Summary

• ID
  rs28153358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105514748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGCTCTC CTATCCCTCT
  AGGATGAGGT CCACCAAGAA TGCACCCATG TATTGGCTAG GTATGAGGAA ATCGTTAGAG
  ATGTTGGAGA TGGAAGTGTG GATTTTGGCC GTGGGAGTTC TGGTAAGATG AAGGGTTGCT
  TTTCTTCAAT GGGATGAGCT CCTTTTGTTG AGTTCCTCTG TGCACTTCCT TGGCTGTATG
  Y
  CACTCTTTCT TCTAGAAGTC ACTTGGAAGT GAAGTACCTA CACATGAGCT TCTGCTTCTG
  CACATGTGGG GAATCTATGT AGAGGAAAGT ACAGCTGGGT ATGCTCTCAG TTGCGCTGAG
  TAATCATTTT TGCAATGACA CTTCAAAGTA GTAATATGTT GTTAGATTTC TATTCTGACA
  CAACCTTTTA GTGAGGACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38292981	NES09495509	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C		C	C	C	C		C
ss321244228	CHEV_4_105330156	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28153358					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38292981	NES09495509	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105514748 () rs orientation: forward

Symbol	Name	Function Class
Rr596636	regulatory region 596636	977 bp distal
Rr596637	regulatory region 596637	974 bp proximal