rs28151649 SNP Detail

Summary

• ID
  rs28151649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105819559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCATGGAG CATAGTGGGT
  GGCCGGAAAG GGGCTGGGCC TGGATCTGAC TGGTTCCAAA GCAAATGTAA ATTACCTACT
  GCATACTCTA AAAGAAAACC CCAAACCAAG AAAACCCTTT AAAAAAAAAA AACGCACGCT
  CCAATGTGGG GTGGACAGTC TGCCAGCAGC AGCTACAGAC ACAGTAAATG GTAAGTGAAT
  R
  CCCAGGGCAT TGAACCTTGT GTTTTGCTTT AAAGCAAAAA CCATCTGAAG AGACTTCTGT
  AAAGCAAGCT TTGGGTGGGG AAAGAGATCT GAGGGGCTGC AAAGCACTGA TATGGCTGTC
  TGTCTCCCCA GCAATCAATG GCCAGGAGAA AGGAAAGGTA AACCCGTTCC CTCAGAGCTG
  TGGTCTTGCG TCTGGAGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38291781	NES09505838	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28151649					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38291781	NES09505838	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105819559 () rs orientation: forward

Symbol	Name	Function Class
Rr376963	regulatory region 376963	within coordinates
Rr596654	regulatory region 596654	within coordinates