rs28151643 SNP Detail

Summary

• ID
  rs28151643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105819918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACCCGTT CCCTCAGAGC
  TGTGGTCTTG CGTCTGGAGA GCTTTGGCTG GCTTGTGGGG ACGGACAGCA GAGATGGTGA
  GATCTGAAAC CCAAGTGCCT CACTAGAACC AGAAAAGGGG AGTTGTTACT GAAAAGCCCC
  CGGAAGTTCT GTTTTCTAAA GACTTGGGGT GGGAGAGGCA ACCCCATCCT GCCCATCATC
  Y
  TTGACTTCCT TCTCAGACAG GCCCCGGCAG TGGAATAATT AGACCAAAGA GTGTGTTTCA
  GGAAACTCTG GCCGCAGCGT CAGGCCCAGG CTTGTTTTAA AGGCAGCTGC TCTGATGTTA
  AAATGAAATA GGACATGTAA CCAGATTATG GGAAAATCAT TGCTATTAAC GACAATAATT
  ACCCTCTGTT CAAGGAGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38291775	NES09505848	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28151643					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38291775	NES09505848	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105819918 () rs orientation: forward

Symbol	Name	Function Class
Rr376963	regulatory region 376963	within coordinates
Rr596654	regulatory region 596654	within coordinates