rs28151159 SNP Detail

Summary

• ID
  rs28151159
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109238963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCATAT TCCTACTTCC
  TACCCACATC TCCCAAATGC TAGCATTAAC CCCAGGCTTG ATTTTGTTTT CCTTTGTTTG
  GGGGTTTGTT TGTTTGGATT TTTAGTAGTG CTAGAGATCA AACCTGGGGC TTCATAGGCT
  ATAACTAGAG CCATTACTCT GTGATCTTAA TGTATAATTC CCCATGTCTG AGCCTCAGTG
  M
  CTTAGTTGTT ATGTGGTAGC TTTAACTCAG GGTTTGCATG CTTTCACGGG GCTTTCTGAA
  GGCATGTGTA GTTATGAGAT ACAAGCATCT TGTGTAAACA TTGATGAAAA GAATCCATTA
  TGACTATCAG CATAACTGGG ATAACTAGGA AAAGCATATT TGAAGAAACT TAAACTTCAC
  CTCTTTTCTT AAAAAAGTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38277888	NES09521311	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	A		C
ss321253918	CHEV_4_109054371	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28151159					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277888	NES09521311	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109238963 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eps15	epidermal growth factor receptor pathway substrate 15			Intron
				Noncoding-Transcript-Variant
Rr597307	regulatory region 597307			638 bp proximal