rs28151158 SNP Detail

Summary

• ID
  rs28151158
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109238985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACATCTC CCAAATGCTA
  GCATTAACCC CAGGCTTGAT TTTGTTTTCC TTTGTTTGGG GGTTTGTTTG TTTGGATTTT
  TAGTAGTGCT AGAGATCAAA CCTGGGGCTT CATAGGCTAT AACTAGAGCC ATTACTCTGT
  GATCTTAATG TATAATTCCC CATGTCTGAG CCTCAGTGCC TTAGTTGTTA TGTGGTAGCT
  K
  TAACTCAGGG TTTGCATGCT TTCACGGGGC TTTCTGAAGG CATGTGTAGT TATGAGATAC
  AAGCATCTTG TGTAAACATT GATGAAAAGA ATCCATTATG ACTATCAGCA TAACTGGGAT
  AACTAGGAAA AGCATATTTG AAGAAACTTA AACTTCACCT CTTTTCTTAA AAAAGTATTG
  CACTTTAAGT AAAACTTTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38277887	NES09521312	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T		G	T	T	G		T
ss321253919	CHEV_4_109054393	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28151158					SNP	T	T	T	T	T	T	G	T	T	T	G	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277887	NES09521312	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109238985 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eps15	epidermal growth factor receptor pathway substrate 15			Intron
				Noncoding-Transcript-Variant
Rr597307	regulatory region 597307			616 bp proximal