rs28151143 SNP Detail

Summary

• ID
  rs28151143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109241217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATCACCT TTTATCCTTG
  ACTTTGGAGA TGAGCAATGC CCCTGACCGT GGCGAGTCCC ATTTGGGTCC TCTCACTCAT
  TTTTTATCCC CATTACTGCT CTGGCTACTT GGAAGAGAGG AGGGCAGGGA GCTAGCTGTA
  TGTGAGGAGC TGCAGCGCCC ACCTGTGGGT CTGTGCTCAG AGTGTGAAGG AGCAAGATAG
  Y
  GATCCCTGTT GAATGACAAC TCAGCATTAT CTTCAGAGTC CATGTCAGAT GGAATGTGAA
  TTGTTTCGAG CAGAGAAGGA GAATTGGCTT TCTTAGGAGA TTGTAATTCT CGGTCTAAAA
  TAACTGTCTG GCAGTTTGTA ACAGTCAGTG TGTTAAATAT GGATCTGCAA GTAAAACCTG
  GTTGGAATGA CTCTTGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38277872	NES09521259	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28151143					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277872	NES09521259	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109241217 () rs orientation: forward

Symbol	Name	Function Class
Eps15	epidermal growth factor receptor pathway substrate 15	Intron
Rr597307	regulatory region 597307	1231 bp distal
Tssr38341	transcription start site region 38341	1878 bp upstream
Tssr38342	transcription start site region 38342	1978 bp upstream