rs28151019 SNP Detail

Summary

• ID
  rs28151019
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109276795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGTGGAT GTTACTCCTT
  TCCTTCAGGG TTAAGGGGTT TTGGTTTGGT GGTGGTGGCG GAGTTGGTGG AGGGTTTTTG
  TTTTTGTTTT TTGAGGCAGG ACCTTGGACT CCTCCCTCTA TCTCCCAAAT GCCGGGATCA
  CAGGCTTGCA CCACTGTCCC AGGCTACACC GCTATTGGCC AGGATTCTTG AGGACCAAAG
  S
  AAAGGCTTGG GGACTTCTCC CTAGGCCTGC CAATTCCCAG ACAACTCCCA ACCTGTGCCA
  TGATTACTCT GTGTCTAGAC AGTGGCTTGA GGAAAGGATT TGGCTCTGGT AGTGGGGGCG
  CTGAACTTGG ACTTGAGTCC CTCAGACACA GGTTGGAATC TTGGCTTTGC CAGTCACCTG
  CTGCGTGACT CTGATAGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38277746	NES09519140	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28151019					SNP	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277746	NES09519140	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109276795 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597318	regulatory region 597318			217 bp distal
Rr597319	regulatory region 597319			637 bp proximal
Rr597320	regulatory region 597320			1995 bp proximal
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				Noncoding-Transcript-Variant