rs28151017 SNP Detail

Summary

• ID
  rs28151017
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109277460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGATGTTT CTGTCCTGGA
  ACTTCTAGAG AGACTGAAAT GGTTCTCAGA TCTCTGGCCA TATCACCCTG CTCAGTAAAT
  GTGAGTCCCT CTGTTTCACC AGTGTTCTGA GTCACTTACT TGAGGGACTT TGGTAACAGG
  ACCAACAGTA TCCCCCAGAC CATTCCTAGC CTCTTCCCTA GGTTCCTCTA GCCCTTCTCT
  S
  CTCTTCTTCC GGTGAGCCCC AGGACTCAGC CCTACCCGTC CAGCCACACC TGCTTGACGG
  GAAGGAAGGA GCCCTGCCCA GGCAGCTGGC AGACAAAGTG GAATTTCTAG TCTGAGACCC
  AAGGCCCCAG TGTATACCCG TGGCTAGGAA TCCTGGCCCT TAGTAGCCCA CTACCTGGAG
  GACTCCGATC TGGTGTGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38277744	NES09519108	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28151017					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277744	NES09519108	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109277460 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597318	regulatory region 597318			882 bp distal
Rr597319	regulatory region 597319			within coordinates
Rr597320	regulatory region 597320			1330 bp proximal
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				Noncoding-Transcript-Variant