rs28151013 SNP Detail

Summary

• ID
  rs28151013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109278100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCAACCC TCCTTCCCTG
  CCTAGGCCCC GACATCTGGC CTCCCCACCC TGAGCCCTCC GACCTGCTGC TGTACTCAGT
  TAGGAACCCC AGGCCAGGCC TACACACTCC CCCAAGCTGC CATTGAGCAA GGATGGAAGC
  AACCTGCAGA CAGGTGATTC CTCAGCTAAA GCCTCAGCCC TCTCAGAAAA CAATGTCCCT
  Y
  TCCTTGTCAT CCCCCAGAAC TTCCTGGCCC CTTGTGCTTA GCAGGTGGCC TAGCCTCTTC
  CTTCAGAGAG AATAGCGAGA CTTAGAGCTG GAAGGTCACT AGAGGTCACT CAGCAGGAAG
  AGGAACTGAG AACTGGACCA AGATCTTTTG TTTTTAATTA CTTGTTACCT GTCTGCAAAG
  TGTTTATTAC CTACCAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38277740	NES09519112	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28151013					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277740	NES09519112	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109278100 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597318	regulatory region 597318			1522 bp distal
Rr597319	regulatory region 597319			217 bp distal
Rr597320	regulatory region 597320			690 bp proximal
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				Noncoding-Transcript-Variant