rs28150465 SNP Detail

Summary

• ID
  rs28150465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108702724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGAGACT GTAGCATATG
  CATGCCCACA TACATGAACA AATGTAGTTC TAAAATGGAA AAGACCATTC TGGCTGAACT
  GTGGGAATAA TGACAGTTAA TGACCTGACC TTATTTATTA GTTTCTTGTA CCAATATTCT
  GAGGTAGAAA TTAGTGTCTT GATTTTATAG ATGGTGAACC AGGACTTAGA TGGCTTCATT
  Y
  AAAACTCTAC AGTCTTAATG GGAAGTGGAG TTATAGATCC ACGTTTTGTG TGTCTGAAGC
  TTCACTGCCG GTCATTTCAG TGATGATGCT CTCTGATCAC TGTGTAAGAC AGTCTCATTC
  ATTCTCACTG TATTGTTGGC ATAGTGTGGT AGTTCACATA GGACTCATTA CTTAAGCTCC
  TTAATAATCA CTAATGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38279791	NES09493481	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28150465					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279791	NES09493481	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108702724 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A730015C16Rik	RIKEN cDNA A730015C16 gene			1872 bp downstream
Rr597229	regulatory region 597229			742 bp proximal
Rr597230	regulatory region 597230			1954 bp proximal
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)			Intron
				Noncoding-Transcript-Variant