rs28150464 SNP Detail

Summary

• ID
  rs28150464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108702758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTCTGAGG TAGAAATTAG TGTCTTGATT TTATAGATGG
  TGAACCAGGA CTTAGATGGC TTCATTCAAA ACTCTACAGT CTTAATGGGA AGTGGAGTTA
  Y
  AGATCCACGT TTTGTGTGTC TGAAGCTTCA CTGCCGGTCA TTTCAGTGAT GATGCTCTCT
  GATCACTGTG TAAGACAGTC TCATTCATTC TCACTGTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38279790	NES09493483	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		C	C	C	T	C	C	C	C
ss45593603	mCV23912918	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss147191516	ENSMUSSNP3450950	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28150464					SNP	C	C	C	C	C	T	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279790	NES09493483	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108702758 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A730015C16Rik	RIKEN cDNA A730015C16 gene			1838 bp downstream
Rr597229	regulatory region 597229			708 bp proximal
Rr597230	regulatory region 597230			1920 bp proximal
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)			Intron
				Noncoding-Transcript-Variant