rs28150462 SNP Detail

Summary

• ID
  rs28150462
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108703000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATG GTTCAGTATT CCCAGAAAAC
  R
  GTGAAGCTGG CGTTGAACAC CAGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38279788	NES09493487	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G		A	A	G	A		A	A	A		A
ss45626559	mCV23912646	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		A
ss147191527	ENSMUSSNP2998675	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
ss321252961	CHEV_4_108518408	CHEVERUD	SCREENING_POP	f	SNP													G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28150462					SNP	G	G	G	G	G	A	G	A	A	A	G	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279788	NES09493487	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108703000 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A730015C16Rik	RIKEN cDNA A730015C16 gene			1596 bp downstream
Cpgi14566	CpG island 14566			1941 bp proximal
Rr398384	regulatory region 398384			1866 bp upstream
Rr597229	regulatory region 597229			466 bp proximal
Rr597230	regulatory region 597230			1678 bp proximal
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)			Intron
				Noncoding-Transcript-Variant