rs28150461 SNP Detail

Summary

• ID
  rs28150461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108703259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTA ACAAAGCTTT CTAGCCATTA
  R
  CTTTGCATTG CTCTCAGATG AAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38279787	NES09493491	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A		G	G	A	G		A	A	G	A		G
ss45567543	mCV23912645	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		G
ss147191533	ENSMUSSNP3593193	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss321252962	CHEV_4_108518667	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28150461					SNP	A	A	A	A	A	G	A	G	G	G	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279787	NES09493491	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108703259 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A730015C16Rik	RIKEN cDNA A730015C16 gene			1337 bp downstream
Kti12	KTI12 homolog, chromatin associated			1795 bp upstream
Rr398384	regulatory region 398384			1607 bp upstream
Rr597229	regulatory region 597229			207 bp proximal
Rr597230	regulatory region 597230			1419 bp proximal
Tssr38317	transcription start site region 38317			1765 bp upstream
Tssr38318	transcription start site region 38318			1835 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)			Intron
				Noncoding-Transcript-Variant