rs28150460 SNP Detail

Summary

• ID
  rs28150460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108703321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA CAAGAACTAT GTAAGTTTCC
  Y
  GATAACAAAA AGTCAGCACT TACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38279786	NES09493493	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		T	T	C	T		C	C	T	C		T
ss45592476	mCV23912644	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		T
ss147191538	ENSMUSSNP4205536	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321252963	CHEV_4_108518729	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28150460					SNP	C	C	C	C	C	T	C	T	T	T	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279786	NES09493493	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108703321 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A730015C16Rik	RIKEN cDNA A730015C16 gene			1275 bp downstream
Cpgi14566	CpG island 14566			1620 bp proximal
Kti12	KTI12 homolog, chromatin associated			1733 bp upstream
Rr398384	regulatory region 398384			1545 bp upstream
Rr597229	regulatory region 597229			145 bp proximal
Rr597230	regulatory region 597230			1357 bp proximal
Tssr38317	transcription start site region 38317			1703 bp upstream
Tssr38318	transcription start site region 38318			1773 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)			Intron
				Noncoding-Transcript-Variant