rs28150456 SNP Detail

Summary

• ID
  rs28150456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108704089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCA CATTTATACT TCTGTACCTA
  Y
  CACACTTGTG CTTGCTGTTG TAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38279782	NES09493328	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		C	T	C	T		C	T	C		T
ss45638280	mCV23912633	ABI	CRAMUS_MOUSE	f	SNP		C	C					T
ss147191551	ENSMUSSNP1179322	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321252966	CHEV_4_108519497	CHEVERUD	SCREENING_POP	f	SNP													C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28150456					SNP	C	C	C	C	C	T	C	T	C	T	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279782	NES09493328	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108704089 () rs orientation: forward

Symbol	Name	Function Class
A730015C16Rik	RIKEN cDNA A730015C16 gene	507 bp downstream
Cpgi14566	CpG island 14566	852 bp proximal
Kti12	KTI12 homolog, chromatin associated	965 bp upstream
Rr398384	regulatory region 398384	777 bp upstream
Rr597229	regulatory region 597229	436 bp distal
Rr597230	regulatory region 597230	589 bp proximal
Tssr38317	transcription start site region 38317	935 bp upstream
Tssr38318	transcription start site region 38318	1005 bp upstream
Tssr42741	transcription start site region 42741	1464 bp downstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	Intron