rs28150447 SNP Detail

Summary

• ID
  rs28150447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108705102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCATTCTA ATCTTTGCGT
  CTCCTTTCTG AGAATGTTGG TCCTTGATCT GGTTGGTTAG AGTTCCGGTT TCCCATAGAA
  ACAAAAGGTC CCGTAAGAGT GTAAGGGAAC AGGAAGCTCG GTTTTCTCTT CCGGTTCCTG
  CCGGAAGTTG ACGCCAAACA TCCGCACATG GATGCCCCTG GAGATCATGC CGCTCGTCGT
  R
  GTTTGCGGGC TGCCGTCCAG CGGCAAGAGC CAGCGGACGG AGGAGCTCCG TCGGGCGCTG
  GCCAGCGAGG GCCGCGCGGT GTATGTGGTG GACGATGCTT CGGTGCTGGG CGCGCAGGAC
  CCGACTGTGT ACGGCGACTC CGCTGGTGAG AAGGCTCTGC GGGCTGCGCT GCGGGCTGCG
  GTGGAGCGGC GCCTGAGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38279773	NES09493354	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28150447					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279773	NES09493354	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108705102 () rs orientation: forward

Symbol	Name	Function Class
A730015C16Rik	RIKEN cDNA A730015C16 gene	within coordinates
Cpgi14566	CpG island 14566	within coordinates
Kti12	KTI12 homolog, chromatin associated	Coding-Synonymous
Rr398384	regulatory region 398384	within coordinates
Rr597229	regulatory region 597229	1449 bp distal
Rr597230	regulatory region 597230	110 bp distal
Tssr38317	transcription start site region 38317	10 bp downstream
Tssr38318	transcription start site region 38318	within coordinates
Tssr42741	transcription start site region 42741	451 bp downstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	Intron