rs28150444 SNP Detail

Summary

• ID
  rs28150444
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108705456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGTACTG CCTCGCCCGG GCCGCGCGCA CGCCGCTCTG
  CTTACTTTAC TGCGTGCGGC CGAACTGGCC GAGCCGCGAG CTTCGGGAGG CTTCCGCCTC
  S
  GAGAACCGGG ACCTGGCTGT CAGCGTGAGC TGGAGACCGC GGGCCGAGAC CGGCGGGAAG
  TCTCAGGCGG CTGGCGCTGT GGAGGAACAG CGCGCCACC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
ss38279769	NES09493367	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	G	C	G	G
ss147191572	ENSMUSSNP4308723	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
rs28150444					SNP	C	C	C	C	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279769	NES09493367	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108705456 () rs orientation: forward

Symbol	Name	Function Class
A730015C16Rik	RIKEN cDNA A730015C16 gene	within coordinates
Cpgi14566	CpG island 14566	within coordinates
Kti12	KTI12 homolog, chromatin associated	Coding-Synonymous
Rr398384	regulatory region 398384	289 bp downstream
Rr597229	regulatory region 597229	1803 bp distal
Rr597230	regulatory region 597230	464 bp distal
Tssr38317	transcription start site region 38317	364 bp downstream
Tssr38318	transcription start site region 38318	334 bp downstream
Tssr42741	transcription start site region 42741	97 bp downstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	Intron