rs28150440 SNP Detail

Summary

• ID
  rs28150440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108705747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTT GAGTCTCCCG ACTCCCGGAA
  Y
  CGCTGGGATC GCCCCTTGTT CACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38279765	NES09493376	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T		C	C	T	C		C	T	C	C		C
ss45596474	mCV23912265	ABI	CRAMUS_MOUSE	f	SNP		T	T				C		C
ss147191587	ENSMUSSNP3657338	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss321252971	CHEV_4_108521155	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28150440					SNP	T	T	T	T	C	T	C	C	C	T	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279765	NES09493376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108705747 () rs orientation: forward

Symbol	Name	Function Class
A730015C16Rik	RIKEN cDNA A730015C16 gene	within coordinates
Cpgi14566	CpG island 14566	within coordinates
Kti12	KTI12 homolog, chromatin associated	Coding-Synonymous
Rr398384	regulatory region 398384	580 bp downstream
Rr597230	regulatory region 597230	755 bp distal
Tssr38317	transcription start site region 38317	655 bp downstream
Tssr38318	transcription start site region 38318	625 bp downstream
Tssr42741	transcription start site region 42741	145 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	Intron