rs28150439 SNP Detail

Summary

• ID
  rs28150439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108705820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CTGTGGTGGG TTTAGAAGAG CCATTGCCCC TCGCGGAGAT CCGGTCTGCC
  Y
  TGTTTGAGAA TCGGGCTCCC CCGCCCCATC AGTCTACGCA GTCTCAGCCT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38279764	NES09493379	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28150439					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279764	NES09493379	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108705820 () rs orientation: forward

Symbol	Name	Function Class
A730015C16Rik	RIKEN cDNA A730015C16 gene	4 bp upstream
Cpgi14566	CpG island 14566	within coordinates
Kti12	KTI12 homolog, chromatin associated	Coding-Synonymous
Rr398384	regulatory region 398384	653 bp downstream
Rr597230	regulatory region 597230	828 bp distal
Tssr38317	transcription start site region 38317	728 bp downstream
Tssr38318	transcription start site region 38318	698 bp downstream
Tssr42741	transcription start site region 42741	218 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	Intron