rs28150170 SNP Detail

Summary

• ID
  rs28150170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107557724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGACACT CTAATGAAAC
  TCCTTTGCAC CCTGAAATCT CATATGTAAT GATGCTATTT TTACAAGAAT ATTTTCACAT
  GTATCTTGCT AAGTATAAAA GACCAGTAAG ATACTGGGTG AACTGAAAAA GATGGAAGTG
  TTTCATTCAT TTTATATAAG ATTATGGCAT GCCTGTGGTG TGCAATCCCT CAAATTGGTC
  Y
  CGGGGCCAAA ATGTATGAGG TCAGTAGGTC CATGCTGTTT GAGGAATGGA GTCACTGGGA
  CATTTAACAC TGTCAAGAAC TCTGGAAATT TAATTTTGAA AATATATGAT TAATACCCCT
  TTTCTCCCAG AACCTACTGT AGGTAAACAA CGGCTCCAGC TGGTCACCCT GGAGCTGCTG
  CCAGAGACAA TTCCTTCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38283796	NES09510012	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	C	C	T	T	T		C	C	T	C		C
ss321250146	CHEV_4_107373132	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28150170					SNP	T	T	C	C	T	C	C	T	T	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283796	NES09510012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107557724 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm70287	predicted gene, 70287	within coordinates
Rr597043	regulatory region 597043	599 bp proximal
Rr597044	regulatory region 597044	779 bp proximal