rs28150154 SNP Detail

Summary

• ID
  rs28150154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107559113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACAAGTT CACATCTCCA
  CCCGTTTCAA ATTCCTCAGT TCTTGTCCCA AATCATCTGT CAATAGGAAT TTATCTAACG
  ATCATCCACT CCAGTGTGAG AGGGGAGCTG GTTCTTCTCC CACAGACTTC CTCTGGAAGG
  AAGGCCAGAA AGGGGCCACG AGGCAGGTAA GCTGCGCATG CGCGTGCTTG CTCGCTCTCT
  Y
  GCTCACGGAG TGCTTGCTAA TGCGGGCTAC TGGGCTCTCT ACTTTAAGTT CATTATCTCG
  TCTGTGCACA CTCCCACCTT GTGACAGCCC TAAAAGGTAG TTATTGTGAA CACAAATTAC
  AGGTCTACAG AAGAAAAAAG TAAATAAACG CAGAAAGAAG CTAAATAACA CGTCTAAGGC
  CACACAAATA GGGGGCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss38283780	NES09510033	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T		C	T	T
ss321250168	CHEV_4_107374521	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs28150154					SNP	T	T	T	T	C	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283780	NES09510033	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107559113 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm70287	predicted gene, 70287	within coordinates
Rr597043	regulatory region 597043	327 bp distal
Rr597044	regulatory region 597044	589 bp distal