rs28148783 SNP Detail

Summary

• ID
  rs28148783
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108286275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTGTGGT TCTGACTTGA
  TTTCTCTGTG TCCTGTGTCA CCTACCGTGT CTTTCCTGCC ATTGTGGACT GAAATCCTTC
  TAAAATGGTG AGCCAAAAAC TTTTCTCCCC TTAGTTGCTT CTTGGGTCAG GTATTGTTGC
  AGTGACGAGA AGAGCAAGTA ACATTGCACA AAAGGAATAT GAAAAAGGAG TAGAAAAGAG
  Y
  TCACAACTAA ACACATTGGG TGTCACTTGA AGTAGAGGAG AGGAGAGTGG ATGGGATGGG
  AAGTAGACAA GGCAAGAGAC TTTTAAGAGC AAAGCTCATG AACTGTGTAA GTAGATGCAT
  GCACACACAC ACACACACAC ACACACACAC ACTCACATGT TTTGGGGTTG CAATCATCTA
  ATCCAGGGGC AGTGAGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38280916	NES09495783	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28148783					SNP	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38280916	NES09495783	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108286275 () rs orientation: forward

Symbol	Name	Function Class
Rr597184	regulatory region 597184	757 bp distal
Rr597185	regulatory region 597185	1807 bp proximal