rs28148781 SNP Detail

Summary

• ID
  rs28148781
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108286624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCACAT GTTTTGGGGT
  TGCAATCATC TAATCCAGGG GCAGTGAGTC TGCTGCAAGT ATAAGGCTAG CCCAAGCTTC
  ATAGTGATTT CCAGTTTAGC CTAGACTACA AATTAAGACC CTGACCCAAA AAAAAAAAAA
  AAAAAGAAAA AAGAAAAAAG AAAAGAAAAA GAAAAAAAGA AACAAAACCA ATAAAATATC
  Y
  GGTCATGTTA CTCCTTTGTT TACTCATTAG AGATATAATC TGTGACCAAG TAGCTTGGGT
  AGGGTGGGAC AGTGATCAAT CACATTGGGA TTGTAGGCTT GTGTTATATA GCACGGTTCT
  GTTAATTTCT GTGGGGTTTT TTTTTTGTTT GTTTGTTTTG TTTTTTTGGC ATATTAATTG
  ATCCTACTTT ACCCTTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38280914	NES09495735	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs28148781					SNP	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38280914	NES09495735	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108286624 () rs orientation: forward

Symbol	Name	Function Class
Gm40223	predicted gene, 40223	1878 bp upstream
Rr597184	regulatory region 597184	1106 bp distal
Rr597185	regulatory region 597185	1458 bp proximal
Rr597186	regulatory region 597186	1961 bp proximal
Tssr38291	transcription start site region 38291	1948 bp upstream