rs28148780 SNP Detail

Summary

• ID
  rs28148780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108286709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCCAGT TTAGCCTAGA
  CTACAAATTA AGACCCTGAC CCAAAAAAAA AAAAAAAAAA GAAAAAAGAA AAAAGAAAAG
  AAAAAGAAAA AAAGAAACAA AACCAATAAA ATATCTGGTC ATGTTACTCC TTTGTTTACT
  CATTAGAGAT ATAATCTGTG ACCAAGTAGC TTGGGTAGGG TGGGACAGTG ATCAATCACA
  Y
  TGGGATTGTA GGCTTGTGTT ATATAGCACG GTTCTGTTAA TTTCTGTGGG GTTTTTTTTT
  TGTTTGTTTG TTTTGTTTTT TTGGCATATT AATTGATCCT ACTTTACCCT TACTTCTTAA
  TCTGTAAAGT GGGGATAATA ATAGCATCAT ATGGTTGGCA GGCCAAATAA GTGGATACTT
  ACTAAATTAA ATATTTTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38280913	NES09495736	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs28148780					SNP	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38280913	NES09495736	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108286709 () rs orientation: forward

Symbol	Name	Function Class
Gm40223	predicted gene, 40223	1793 bp upstream
Rr597184	regulatory region 597184	1191 bp distal
Rr597185	regulatory region 597185	1373 bp proximal
Rr597186	regulatory region 597186	1876 bp proximal
Tssr38291	transcription start site region 38291	1863 bp upstream