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rs28148778 SNP Detail
Summary
  • ID
    rs28148778
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:108286947 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAATTTCTGT GGGGTTTTTT
    TTTTGTTTGT TTGTTTTGTT TTTTTGGCAT ATTAATTGAT CCTACTTTAC CCTTACTTCT
    TAATCTGTAA AGTGGGGATA ATAATAGCAT CATATGGTTG GCAGGCCAAA TAAGTGGATA
    CTTACTAAAT TAAATATTTT GTACTGCTGG TCAGAATACA GTTATTATTC ATGTATCCTG
    R
    GCTCTTCACA GTTTAGATTC TAAGTAGTCT ACCAGCCTCA TTTCCTGACT GCTCTGTGTT
    TCTCATGTCC AGTAAGCCCT GCTTTCTCTT TCCCAATAGA CTCCCACTTG ATTGAAACAA
    TCTTATCTTT GGGGAAGCCT TGCTTGGGCC CCTTGCCACA GACAGTACAT ACTTCTTTGT
    CCTCCCAAGT CCCCTGTGTA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss38280911 NES09495717 PERLEGEN MM_PANEL2 f SNP G G G G A G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs28148778 SNP G G G G A G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38280911 NES09495717 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:108286947 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm40223 predicted gene, 40223 1555 bp upstream
Rr597184 regulatory region 597184 1429 bp distal
Rr597185 regulatory region 597185 1135 bp proximal
Rr597186 regulatory region 597186 1638 bp proximal
Tssr38291 transcription start site region 38291 1625 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory