rs28148769 SNP Detail

Summary

• ID
  rs28148769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108289592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TTCGTGCATG ATGTGTGTAG GGGACAGGAC AGGATCTCAT TATGTAGCCC
  AGGCTGGCTG GCCTCAGATA ATTTTCATGC AACTCATCCC CATGTGCTGG GATTACAGGC
  ATGTGCAACC ACACCCACCT AGAAGGTCTT ATTGAACCCT GTTTACTAGG TGAAATACAA
  Y
  TCTTTCCAAC ATCCGTTCCA TATTTGTGTG TATATGAATT GATGTACCCT GTGCTTCAAC
  CACACTGCAT TTTCTCATTC AATAGACGAA AACCTTATTT CCTTATATCC AAAGAGATGC
  CAGTGTACTC GTGTCTAGTT GTGTACTAGT ACAACAGTTA AGATACAGAA CCAATCTAGA
  TGTCTTCTGT CAGTGAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38280900	NES09495540	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28148769					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38280900	NES09495540	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108289592 () rs orientation: forward

Symbol	Name	Function Class
Gm40223	predicted gene, 40223	within coordinates
Rr597185	regulatory region 597185	1008 bp distal
Rr597186	regulatory region 597186	440 bp distal
Rr597187	regulatory region 597187	995 bp proximal
Tssr38291	transcription start site region 38291	1013 bp downstream