rs28148766 SNP Detail

Summary

• ID
  rs28148766
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108290104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATAAAT CAGAAACAGA
  AGGACGAATC CCACATGCTC TCTCTTGTAT GTGGATGCTT AAAAACTCTG CGTGAGTTCA
  GGGAAGAGGG AGGTTGGATG TGCAATGGGC AATTCTCCTC TACCCTTTTG TAGGAAGGTT
  GCTTCCCTTA TCAAAAGACT AAGAAGCTAC CTGGAGCCCA CTGACCGGTG CTGTGTGCTC
  R
  GTCCCTGTAG GGACCTGCTT TTTTTTTTTA TATCCTCTAT GGTCTCTGTA AGTGCTGGTT
  TATTTCTTCT TTAGCTTAAA AGTTCTAGGA GAGCAAGGAT CAGGATGGAT AGCCCTGGAC
  GCTCAGTACT TGGGACATGA AGAACTGTTC TCTCCAGCTA CAAGCAAGAA ATAGAATAAT
  TAATCTGAAT AATACATTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38280897	NES09495501	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28148766					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38280897	NES09495501	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108290104 () rs orientation: forward

Symbol	Name	Function Class
Gm40223	predicted gene, 40223	within coordinates
Rr597185	regulatory region 597185	1520 bp distal
Rr597186	regulatory region 597186	952 bp distal
Rr597187	regulatory region 597187	483 bp proximal
Tssr38291	transcription start site region 38291	1525 bp downstream