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rs28148762 SNP Detail
Summary
  • ID
    rs28148762
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:108290860 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATTGGCAATA ATTTCTACCT
    TCCCCTCCCC CTATTGAAAG GCAGCTCACA TCTTATTAGA AGAAAACCAG ATCACTAACC
    TGGGAACCCG AGTCCTGGAA GGAGTTTATT TTACCAGCCA GCACAAGCTT CCAGAGGGAG
    CAGAAGGCAG GAAGCCTGCG TTTTCTCTCT GCTCCAGTCC ACCTGGTACC TGGACTGATC
    R
    CCACGCTTGT GATTGGCCTT TGCTTCCCCA GCTCCCTCGT GGGACACTTT TCAGCCTTCG
    AAATATCCAG GCAGATGTTT CCTGTGGAAA ATATTCCCTA GGACAGCTCT CTGTTATATG
    GGTTTCTGGT AGAAGTATCA AAGGGTTGAG GCTGGACCCA GATGAAAAGC CTAGAAGGTA
    TATAGTGTGC CTTTGAGGGA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss38280893 NES09495505 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A G A A G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs28148762 SNP A A A A A A G A A A G A A G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38280893 NES09495505 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:108290860 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm40223 predicted gene, 40223 within coordinates
Rr597186 regulatory region 597186 1708 bp distal
Rr597187 regulatory region 597187 within coordinates
Rr597188 regulatory region 597188 1763 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory