rs28148152 SNP Detail

Summary

• ID
  rs28148152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108935461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGAG AGAGAGAGAA
  AGGGAAAATG TAAAAACAGT AAACATATGA AAATATTTAA AGGAGGGGAG GGATTAGAAG
  AGACAAAGAA AAGAGGAGGA GGAGAGCCCA CCATGTAAAA CCAACTCCTC TGCGCATCCC
  GCCCCTTACT CCTGACTCCC ACCCAGGTGG AATTTATCCC ACATATAAGT TACTTTTCCT
  Y
  GACTTAAAAG CTGATTTTCT TCACTAACAT GAACTTCAGG AGCCAACAAT GGGTTTCCTA
  TGAATCACTA CAGCAGATGA GTGCCAGTTC TTATTTCATG TGCACACTTA AAAGAACAAA
  AATAAAGTCC TACCTACAGC CCCCCTCCAT CTTTCTCTCT CACTCCTCCT CCTCCTTTTT
  TTAAACCTTT TTCTTTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38278880	NES09526778	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28148152					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38278880	NES09526778	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108935461 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32581	predicted gene, 32581			765 bp upstream
Osbpl9	oxysterol binding protein-like 9			Intron
				Noncoding-Transcript-Variant
Rr597257	regulatory region 597257			1477 bp distal
Rr597258	regulatory region 597258			1491 bp proximal
Rr597259	regulatory region 597259			1903 bp proximal