rs28148144 SNP Detail

Summary

• ID
  rs28148144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108937298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCCTGC CCCACCCCAG
  TGCTGGCTTT AATGCATGCC AGGCAAGCAC TTAACCACTG AGCCTCACCT CAGTCCTGCT
  ACGCTCTTAA AGAAGAAAAC TACCTAGTGA CAGAAGAAGA GGAGAGGACA AGTATTGGGA
  GAAAGGACAA AGGGACACAC CAGAACTTTC AATAGCTATG CTCTTTCCTG AGCCTGTTGA
  Y
  GATTCGCAGT ACACAAATGT TCATGCAACT CTATCAATTA TGCCTTCACA CACACACACA
  TAAAAAGACA AAACAAGAAA CCCAAGAGAA AGATGACAGC CGGCAATGCC ATGTACAAAG
  CAGGGCTTCT CTTGACTGCT TCTTAGAATG AAAAGGAACA TCTGGGGCAG ACTTCTCCAG
  CCTGACCCTG ACCCTGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38278872	NES09526646	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28148144					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38278872	NES09526646	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108937298 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32581	predicted gene, 32581			within coordinates
Osbpl9	oxysterol binding protein-like 9			Intron
				Noncoding-Transcript-Variant
Rr597258	regulatory region 597258			83 bp distal
Rr597259	regulatory region 597259			66 bp proximal