rs28148142 SNP Detail

Summary

• ID
  rs28148142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108937594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCGGCA ATGCCATGTA
  CAAAGCAGGG CTTCTCTTGA CTGCTTCTTA GAATGAAAAG GAACATCTGG GGCAGACTTC
  TCCAGCCTGA CCCTGACCCT GGGAAAACTC TGATCTCTAG TGGTGGGTGG TTCTTATACG
  CAACTAAGGA GTTAAGCAAA TGCTTCCCAC CCATAGGGCC AAGGGCTAAA TTTCCAGTAC
  Y
  AGACAGCAAC AACGAACTCC AAACAAAACG AGGACTGCTG TGTGAACAGT GAGAAAGGGC
  TTGCTTCCGC TTATGTAACT GTTTTAAAGC CAGCACCCCC CACTAAGTAC TAAGTAGTTT
  ATTTTTTTTT CTAGTGTTTA AGTATAAACA AGAAAACCGT GTTTTTCCCT CTTTCCACAA
  AAGGTAGTGA GTAAACTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38278870	NES09526650	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C	T	T	C	C	C	T	T	C	T	C
ss147194300	ENSMUSSNP1618116	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28148142					SNP	C	C	C	C	T	C	T	T	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38278870	NES09526650	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108937594 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32581	predicted gene, 32581			within coordinates
Osbpl9	oxysterol binding protein-like 9			Intron
				Noncoding-Transcript-Variant
Rr597258	regulatory region 597258			379 bp distal
Rr597259	regulatory region 597259			within coordinates