rs28148134 SNP Detail

Summary

• ID
  rs28148134
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108939027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCATCTCT CCAGCCCTAT
  GCTGCTCTTT CTTTAGAGCT TCCTGCCTAC TTTAAGCTGT AGGCTCTGGT CTGCACTACA
  GTGGCTGAAC TCATCTTTCT TCTGTATCTC TAGACTGCAT TCCACCAGGG TAATGATGTC
  ACTCAGGTGG TTCTGTTTCA GATTCCCCAT ATTTTAAATA GCCCCTCCAA AACAAAGCAA
  R
  TCACCATCCA GTGAAATTCA AATCCCAGTG ACTGCTGCTT TTCAATGCTG TAAAGCATTG
  CTAATGCAGT AGCTGAAGAT GTGGGCCAGT TTGTCCACGT AATGATCTCT TGCAGAGCCT
  ATCCATCAAT GCTGCAAATT CCATCACATA AGCTGGAGAC ACTGTGGGCA ACGGTGAGGA
  GCGCAGGCTC CCACCCTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38278861	NES09526524	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28148134					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38278861	NES09526524	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108939027 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32581	predicted gene, 32581			586 bp downstream
Osbpl9	oxysterol binding protein-like 9			Intron
				Noncoding-Transcript-Variant
Rr597258	regulatory region 597258			1812 bp distal
Rr597259	regulatory region 597259			1304 bp distal