rs28147702 SNP Detail

Summary

• ID
  rs28147702
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108000742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTATTTTT TGTGTTGATA TCAGGAACTG GCTTGGCGGA
  TTGCTTCCAA GCCCAGTGAT GTCATCCATA GTTGACAGGG ACCAACACAT CTATTGCCAC
  S
  ACAATTTGCT TACATTCCCA GAGTCCACTT CCCACCCTTA CCTTCCAGTG GTTACGTCAC
  AGGCTAAATA AAAGGCAAAT CCTTCCTGGC CGTCCCCCC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38281730	NES09511607	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	C
ss45717698	mCV24670872	ABI	CRAMUS_MOUSE	f	SNP		G					C
ss147185459	ENSMUSSNP3490020	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28147702					SNP	G	G	G	G	G	G	C	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281730	NES09511607	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108000742 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68212	predicted gene, 68212			1829 bp downstream
Rr376981	regulatory region 376981			1095 bp upstream
Rr597136	regulatory region 597136			162 bp distal
Scp2	sterol carrier protein 2, liver			Intron
				Noncoding-Transcript-Variant
Tssr42716	transcription start site region 42716			1407 bp downstream
Tssr42717	transcription start site region 42717			1441 bp downstream