rs28147701 SNP Detail

Summary

• ID
  rs28147701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108001710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTTCTAGTT TGTCTGAGAG TAAGGCCATC CACATTATCT
  CCAGAGCTTC ATGCATCTCC TGGAGCCAGA TAGACCAGAG AGGTCTCTCA GCAAATGGCC
  Y
  AGGCTGCTCT CTGATGCTGT GATAAAGCAC TGAGACCTAA AGCAACCTGG GGAAAGATTT
  ATTTCATACT CTAACTCCCA GGTTACAATC CACCACTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38281729	NES09511608	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	T	T	T	C	C
ss45618458	mCV24670862	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					T	C
ss147185461	ENSMUSSNP1903864	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28147701					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281729	NES09511608	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108001710 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68212	predicted gene, 68212			861 bp downstream
Rr376981	regulatory region 376981			127 bp upstream
Rr597136	regulatory region 597136			1130 bp distal
Scp2	sterol carrier protein 2, liver			Intron
				Noncoding-Transcript-Variant
Tssr42716	transcription start site region 42716			439 bp downstream
Tssr42717	transcription start site region 42717			473 bp downstream